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Equation 21 · Part 9 · Evolutionary Biology and Ecology in Practice: An Advanced Technical Guide

Numerator: 1

N^e≈13 (r^2−1S)\hat{N}_e \approx \frac{1}{3\,(\hat{r}^2 - \tfrac{1}{S})}
11

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Its job in the formula

1 is a part of this expression. Its role is fixed by the surrounding article and by the operations shown in the formula.

The passage around this formula

The relationship Waples and Do build their estimator around, in the form most commonly used for the single-sample method: N^e≈13 (r^2−1S)\hat{N}_e \approx \frac{1}{3\,(\hat{r}^2 - \tfrac{1}{S})}. where r^2\hat{r}^2 is the mean squared correlation of allele frequencies across pairs of loci observed in the sample, and S is the sample size, with the 1/S term correcting for the sampling bias that a finite number of genotyped individuals introduces into r^2\hat{r}^2 even when the true population NeN_e is large. The practical consequence practitioners have to internalize: r^2\hat{r}^2 is estimated with noise from a finite sample, and that noise itself creates apparent linkage disequilibrium indistinguishable from drift-generated LD unless it is explicitly…

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