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Equation 6 · Comparing the Main Approaches to AI for Science and Medicine

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xix_i

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the coordinate of atom i in the experimentally solved structure, x^i\hat{x}_i is the corresponding coordinate in the predicted structure after optimal superposition of the two. Read the equation part by part below; each part has a contextual explanation and a link to its mathematical background.

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xix_i

Symbol x_i

the coordinate of atom i in the experimentally solved structure, x^i\hat{x}_i is the corresponding coordinate in the predicted structure after optimal superposition of the two.

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subscript

subscript

The lower label selects a particular version, component, or indexed member of the quantity. For example, x₀ and xₜ can be values at different positions.

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where xix_i is the coordinate of atom i in the experimentally solved structure, x^i\hat{x}_i is the corresponding coordinate in the predicted structure after optimal superposition of the two, and N is the number of atoms compared. This is a statement about the average positional deviation of one predicted, static conformation from one experimentally solved, static conformation. It is not, by construction, a statement about how the molecule moves, how quickly it interconverts between conformations, or what its folding pathway looks like — and that distinction is the entire content of what comes next.

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